Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007346.1 Corchorus capsularis cultivar CVL-1 contig07367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18992

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3392--3427
2
18.0
2
100
0
72
50
0
0
50
1.00
4048--4103
22
2.5
22
82
2
67
41
10
10
37
1.75
4114--4194
23
3.6
23
79
1
92
40
13
4
40
1.66
4070--4193
22
5.5
22
77
3
97
38
12
8
40
1.73
4193--4392
22
9.5
22
74
6
123
31
17
10
41
1.83
4193--4335
45
3.2
44
84
3
164
34
13
9
41
1.78
4326--4392
19
3.5
19
87
2
98
23
22
11
41
1.87
4499--4745
22
11.3
22
71
12
152
33
13
9
42
1.77
4480--4644
44
3.8
44
76
10
160
34
12
9
43
1.75
4480--4640
88
1.8
87
85
4
225
33
12
9
44
1.75
4499--4842
22
15.5
22
69
17
135
34
14
9
40
1.79
4925--5056
22
5.9
22
79
8
72
37
19
10
32
1.86
4979--5063
22
3.9
22
90
0
134
32
17
14
35
1.90
4979--5076
22
4.5
22
83
5
99
31
19
14
34
1.92
5241--5265
6
4.2
6
100
0
50
16
0
32
52
1.44
5391--5449
30
1.9
31
93
3
102
47
3
18
30
1.65
5622--6182
22
25.7
22
68
10
192
36
15
9
38
1.81
5753--5838
45
1.9
45
83
4
111
38
16
11
33
1.85
5890--5988
23
4.4
23
84
1
103
38
15
9
37
1.79
5907--6013
45
2.4
45
80
9
119
36
15
9
38
1.80
6296--6347
22
2.4
22
78
9
54
40
7
7
44
1.62
6272--6419
44
3.4
45
76
9
119
34
11
10
43
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6360--6432
22
3.3
22
74
0
65
39
12
10
36
1.78
6550--6647
44
2.2
43
79
12
101
35
21
6
36
1.78
6548--6652
22
4.8
21
73
16
81
34
20
6
38
1.79
6706--6880
44
4.0
43
80
7
174
38
16
9
36
1.81
6699--6882
22
8.3
22
76
9
158
38
17
9
34
1.82
8768--8805
19
2.0
20
85
15
53
63
2
5
28
1.30
8879--8936
25
2.3
24
79
8
62
51
1
3
43
1.28
9754--10210
228
2.0
228
93
0
770
22
21
10
45
1.82
11523--11618
38
2.6
37
81
3
120
58
9
18
13
1.62
11894--12011
61
2.0
60
93
1
200
33
8
12
45
1.72
11972--12036
23
2.8
23
65
9
60
35
3
13
47
1.59
12319--12357
18
2.2
18
95
0
69
23
5
7
64
1.40
12342--12406
33
2.0
33
93
0
112
27
7
12
52
1.66
12622--12839
109
2.0
109
92
1
366
29
22
10
37
1.88
13724--13750
13
2.1
13
100
0
54
14
7
55
22
1.64
15610--15648
20
2.0
20
89
0
60
10
43
2
43
1.52
17713--17747
2
17.5
2
100
0
70
48
0
0
51
1.00
17863--17901
20
2.0
20
89
0
60
10
43
2
43
1.52

Tables:   1

The End!