Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007347.1 Corchorus capsularis cultivar CVL-1 contig07368, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20572

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
839--889
22
2.4
21
84
9
68
17
17
19
45
1.86
1297--1384
43
2.0
43
95
0
158
30
17
5
46
1.71
2683--2712
15
2.0
15
93
0
51
33
20
30
16
1.94
6217--6247
14
2.2
14
100
0
62
22
19
16
41
1.89
7018--7046
14
2.1
14
100
0
58
24
27
34
13
1.93
7178--7219
20
2.1
20
100
0
84
61
9
9
19
1.53
8445--8628
22
8.3
22
69
12
81
32
10
19
38
1.85
8446--8571
44
2.9
43
83
4
128
35
12
15
35
1.86
8664--9611
22
43.1
22
67
15
193
38
9
16
35
1.80
8813--8875
21
2.8
22
83
11
74
46
9
9
34
1.69
9278--9405
23
5.7
23
86
3
145
40
6
12
40
1.68
9569--9617
22
2.2
22
82
7
55
48
10
14
26
1.75
9830--9859
2
15.0
2
100
0
60
50
0
0
50
1.00
11326--11434
54
2.0
53
89
7
166
33
15
11
38
1.84
11599--11739
71
1.9
73
92
5
241
48
12
12
26
1.76
14886--14925
19
2.1
19
100
0
80
15
0
17
67
1.23
20535--20563
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!