Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007350.1 Corchorus capsularis cultivar CVL-1 contig07371, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40433

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1575--1812
79
3.0
79
98
0
458
30
23
18
28
1.97
2104--2145
19
2.3
18
84
8
57
61
0
4
33
1.17
2395--2466
37
1.9
37
97
0
135
41
9
13
34
1.78
2936--2986
24
2.1
25
96
3
95
25
27
0
47
1.53
2936--2998
24
2.6
24
87
9
76
28
25
0
46
1.53
5139--5174
18
2.0
18
94
0
63
55
19
0
25
1.43
10309--10354
21
2.2
21
100
0
92
50
8
23
17
1.74
10720--10774
24
2.2
25
93
6
103
23
29
0
47
1.52
10722--10786
24
2.7
24
88
9
80
26
27
0
46
1.53
11008--11038
6
5.0
6
92
7
53
16
0
48
35
1.46
11008--11038
13
2.5
12
94
5
53
16
0
48
35
1.46
11092--11124
18
1.9
17
88
11
50
39
0
24
36
1.56
14082--14121
21
1.9
21
100
0
80
20
10
32
37
1.85
18250--18299
24
2.1
24
92
0
82
46
14
18
22
1.84
21549--21591
21
2.2
19
83
8
50
58
4
0
37
1.19
21651--22040
99
3.9
98
84
4
507
34
11
16
37
1.84
21662--22045
198
1.9
199
88
2
576
34
11
16
37
1.85
22407--22438
16
2.0
16
93
0
55
15
37
9
37
1.80
32290--32330
21
2.0
21
100
0
82
19
14
34
31
1.92
33367--33419
21
2.6
21
81
3
63
26
30
35
7
1.84
35205--35238
17
2.0
17
94
0
59
55
14
5
23
1.61
35311--35345
10
3.7
9
88
11
52
82
0
0
17
0.66

Tables:   1

The End!