Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007352.1 Corchorus capsularis cultivar CVL-1 contig07373, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33556

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3528--3573
22
2.1
22
87
0
65
32
19
15
32
1.93
6722--6836
49
2.3
50
85
2
144
39
18
27
14
1.90
7244--7307
32
2.0
32
87
6
94
43
7
6
42
1.58
7456--7631
51
3.5
51
89
1
246
36
17
4
41
1.70
9748--9786
20
2.0
20
94
0
69
41
17
10
30
1.83
9933--9960
14
2.0
14
100
0
56
50
14
14
21
1.78
10284--10360
27
2.8
28
80
4
93
46
27
10
15
1.78
11706--11752
7
6.6
7
79
13
51
2
17
2
78
0.94
12428--12514
32
2.7
33
90
3
149
32
19
10
37
1.86
17233--17566
49
6.9
49
79
8
283
37
14
29
18
1.91
17254--17563
50
6.4
50
79
9
295
37
14
30
18
1.90
17254--17561
99
3.2
100
81
7
325
36
14
30
18
1.91
17576--17910
40
8.1
40
80
11
331
37
22
25
14
1.92
17613--17857
128
1.9
128
87
8
365
35
22
27
14
1.93
17860--17989
49
2.7
48
81
8
140
40
21
23
14
1.90
17692--18082
47
8.7
45
72
18
169
38
21
23
16
1.93
18730--18793
32
2.0
32
87
6
94
43
7
6
42
1.58
18929--19102
51
3.5
51
84
5
180
35
16
4
43
1.69
19477--19508
13
2.4
14
89
10
57
0
15
6
78
0.95
23777--23832
28
2.0
28
82
6
69
16
17
7
58
1.59
27456--27486
16
1.9
16
93
0
53
38
16
12
32
1.86
28019--28158
44
3.1
44
90
3
226
34
8
20
36
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28504--28574
32
2.2
32
89
2
106
70
0
18
11
1.16
28530--28581
27
2.0
27
88
3
79
67
0
17
15
1.24
28518--28572
18
3.3
19
67
30
52
65
0
20
14
1.27
28519--28595
25
3.0
25
80
10
84
64
0
20
14
1.28
28901--28943
13
3.4
13
81
15
54
81
0
18
0
0.69
28893--28941
7
6.7
7
82
15
55
81
0
16
2
0.78
29231--29331
50
2.0
50
88
0
148
35
14
12
36
1.85
29853--30097
68
3.6
68
85
4
296
27
28
15
28
1.96
30236--30725
47
10.4
47
84
3
560
20
25
19
33
1.96
31620--31646
6
4.5
6
100
0
54
55
14
0
29
1.40
32439--32472
6
5.7
6
100
0
68
29
0
35
35
1.58
32603--32628
10
2.6
10
100
0
52
23
7
19
50
1.73

Tables:   1

The End!