Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007357.1 Corchorus capsularis cultivar CVL-1 contig07378, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38430

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18--69
24
2.2
24
93
6
88
44
9
1
44
1.48
18--82
24
2.7
24
83
11
78
44
9
1
44
1.45
1733--1859
62
2.0
62
93
0
218
28
25
12
33
1.93
6970--7046
39
2.0
39
94
0
136
46
3
20
28
1.68
7439--7519
37
2.2
38
82
10
105
34
4
20
39
1.75
7557--7600
21
2.1
21
91
0
70
56
18
11
13
1.66
10330--10358
2
14.5
2
100
0
58
51
0
0
48
1.00
12462--12533
37
1.9
37
88
0
108
19
16
22
41
1.90
25052--25181
64
2.0
64
96
0
242
37
15
13
33
1.87
27558--27603
18
2.5
18
82
3
56
58
19
0
21
1.39
27558--27618
19
3.3
18
81
4
59
57
16
1
24
1.48
30348--30406
30
2.0
30
100
0
118
25
0
27
47
1.52

Tables:   1

The End!