Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007358.1 Corchorus capsularis cultivar CVL-1 contig07379, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24268

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
184--252
31
2.2
32
79
10
79
46
4
14
34
1.64
192--257
31
2.1
31
86
5
89
46
3
18
31
1.64
286--334
2
24.0
2
91
4
80
48
0
4
46
1.20
4129--4234
33
3.2
33
80
6
119
16
38
34
10
1.82
4134--4190
17
3.4
17
69
13
55
17
36
33
12
1.87
4141--4246
33
3.3
31
79
9
106
13
35
39
11
1.80
4326--4401
33
2.4
33
82
6
95
13
39
35
11
1.81
4457--4548
33
2.8
33
93
3
152
10
29
43
16
1.82
7325--7350
12
2.2
12
100
0
52
42
0
7
50
1.31
8876--8953
16
4.6
18
74
18
53
17
7
33
41
1.79
8877--8941
32
1.9
35
90
9
109
18
9
33
38
1.83
9094--9174
16
5.1
16
80
0
90
7
11
30
50
1.65
21185--21341
74
2.1
75
91
5
266
21
30
8
39
1.83
21348--21386
20
1.9
21
94
5
71
30
0
10
58
1.31

Tables:   1

The End!