Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007360.1 Corchorus capsularis cultivar CVL-1 contig07381, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47307

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1227--1316
48
1.9
47
82
10
114
5
26
10
57
1.53
4848--4872
2
12.5
2
100
0
50
52
0
48
0
1.00
7104--7157
21
2.6
21
90
0
81
14
18
48
18
1.82
10164--10193
16
1.9
15
93
6
51
10
13
13
63
1.52
14130--14210
33
2.5
33
85
0
99
24
11
20
43
1.85
14157--14226
33
2.1
33
89
0
104
25
8
20
45
1.79
14242--14314
33
2.2
33
85
0
101
38
8
17
35
1.80
14253--14330
33
2.4
33
86
4
104
29
8
23
38
1.85
14659--14717
30
2.0
30
90
6
93
32
15
35
16
1.90
14936--14960
8
3.1
8
100
0
50
36
16
24
24
1.94
18658--18725
33
2.1
33
91
2
111
47
4
30
17
1.68
19797--19839
4
10.8
4
94
0
50
67
0
23
9
1.19
23101--23130
2
15.5
2
93
6
53
50
0
0
50
1.00
26345--26613
2
137.0
2
89
7
419
47
0
1
50
1.10
34779--35283
198
2.6
197
92
1
814
29
10
20
38
1.87
35210--35252
20
2.2
20
86
0
59
27
6
18
46
1.75
36680--36716
2
19.0
2
94
5
67
48
0
0
51
1.00
41240--41289
2
25.5
2
91
4
75
48
4
0
48
1.20
42967--43026
18
3.1
21
77
22
60
48
0
0
51
1.00
42970--43023
5
10.4
5
84
6
54
48
0
0
51
1.00
42979--43026
15
3.1
15
87
3
60
52
0
0
47
1.00
46106--46182
27
2.9
27
86
3
102
18
19
22
40
1.92

Tables:   1

The End!