Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007364.1 Corchorus capsularis cultivar CVL-1 contig07385, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23665

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8--1490
330
4.5
329
79
7
1452
36
17
14
32
1.89
1--1490
662
2.2
659
83
5
1932
36
17
14
32
1.89
1547--1637
27
3.4
26
80
18
91
47
2
7
42
1.44
1547--1620
27
2.7
29
86
13
97
47
2
8
41
1.47
1553--1633
25
3.2
23
80
16
72
46
2
8
41
1.48
1865--1960
38
2.6
37
79
9
113
55
9
19
15
1.67
2008--2058
15
3.6
15
69
15
54
54
0
11
33
1.37
2084--2179
31
3.1
31
92
1
149
48
4
16
30
1.65
5031--5291
128
2.0
129
86
4
364
30
14
22
32
1.94
5031--5291
66
4.0
66
86
4
368
30
14
22
32
1.94
9180--9224
20
2.2
20
84
7
56
28
28
22
20
1.98
11737--11780
23
2.0
22
86
4
61
34
2
6
56
1.38
11996--12039
21
2.2
20
84
12
54
38
9
38
13
1.77
14372--14406
14
2.4
15
90
4
54
51
0
2
45
1.16
15655--15767
55
2.1
55
98
0
217
23
2
24
49
1.63
21735--21772
2
19.5
2
94
5
69
50
0
0
50
1.00
22367--22413
19
2.5
18
80
16
51
57
4
0
38
1.18

Tables:   1

The End!