Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007365.1 Corchorus capsularis cultivar CVL-1 contig07386, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66843

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3140--3165
10
2.6
10
100
0
52
38
23
7
30
1.83
3345--3390
22
2.1
22
87
0
65
19
34
10
34
1.87
3512--3584
33
2.2
33
88
7
105
16
38
38
6
1.75
4743--4797
12
4.5
12
90
4
83
27
23
14
34
1.94
4743--4797
25
2.2
24
90
3
83
27
23
14
34
1.94
4824--4881
29
2.0
29
96
0
107
51
15
6
25
1.68
4827--4889
29
2.2
29
85
0
81
53
14
7
23
1.66
5838--5864
13
2.1
13
100
0
54
44
14
22
18
1.86
13401--13430
2
15.0
2
92
0
51
53
0
0
46
1.00
13950--13990
21
2.0
21
85
0
55
43
0
12
43
1.41
21388--21419
15
2.1
15
100
0
64
37
18
12
31
1.88
42169--42244
29
2.6
29
78
15
86
59
17
6
17
1.58
42246--42328
25
3.5
24
70
17
73
57
20
13
8
1.61
42261--42365
50
2.2
49
86
5
142
52
23
12
11
1.71
43296--43329
15
2.3
15
90
5
52
35
0
0
64
0.94
47150--47197
2
24.0
2
86
0
69
50
2
4
43
1.33
47178--47258
42
1.9
42
97
0
153
30
8
13
46
1.73
48109--48133
12
2.1
12
100
0
50
32
16
28
24
1.96
52460--52516
23
2.5
23
82
5
62
49
3
10
36
1.55
52638--52709
36
2.0
36
94
0
126
44
11
6
37
1.67
53330--53368
18
2.2
18
85
0
51
43
0
10
46
1.37
53328--53384
16
3.4
16
80
9
53
45
3
10
40
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57247--57288
18
2.3
18
84
12
50
45
11
7
35
1.69
57644--57683
12
3.2
12
79
6
53
37
0
5
57
1.21
59379--59407
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!