Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007369.1 Corchorus capsularis cultivar CVL-1 contig07390, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82784

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
255--536
55
5.1
55
74
10
297
29
18
18
33
1.95
250--536
110
2.6
110
98
0
547
29
17
18
33
1.94
735--775
22
1.9
22
90
5
66
56
4
7
31
1.48
17574--17610
18
2.1
18
100
0
74
62
10
10
16
1.55
19405--19438
2
16.5
2
93
6
59
47
2
0
50
1.16
19439--19481
11
3.9
11
87
0
59
44
6
4
44
1.52
19435--19481
22
2.1
22
92
0
76
44
6
4
44
1.49
22359--22609
22
11.2
22
67
12
100
39
8
19
32
1.82
22359--22503
44
3.3
43
75
4
137
40
9
15
33
1.80
22677--22715
20
1.9
21
89
5
62
33
7
12
46
1.71
22779--22861
22
3.8
22
70
17
57
33
12
12
42
1.79
24315--24348
13
2.5
13
90
9
50
29
2
11
55
1.50
24882--24912
15
2.1
15
93
0
53
32
9
35
22
1.87
32449--32691
108
2.2
109
86
5
348
23
23
20
32
1.98
32683--32857
40
4.4
40
74
7
142
37
21
18
22
1.94
32850--33012
29
5.3
29
67
16
103
28
25
15
30
1.96
32799--33035
61
3.6
64
80
10
239
31
24
16
27
1.96
33558--33767
93
2.3
89
80
9
228
29
26
18
26
1.98
33532--33767
45
5.1
45
78
6
240
30
26
16
26
1.97
33532--33795
45
5.8
44
72
16
117
30
25
17
27
1.97
33817--33868
27
1.9
27
84
0
68
21
23
21
34
1.97
33901--34038
45
3.1
45
87
3
199
25
21
21
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34328--34446
36
3.3
36
86
2
159
26
22
22
27
1.99
34610--34748
46
3.0
45
88
2
188
30
22
17
30
1.96
36180--36205
2
13.0
2
100
0
52
50
0
0
50
1.00
37092--37121
13
2.3
13
94
0
51
26
10
26
36
1.88
37732--37762
12
2.6
12
89
0
53
45
22
9
22
1.81
43136--43202
27
2.5
28
83
11
77
37
11
22
28
1.90
43148--43202
27
2.0
28
92
7
94
36
12
25
25
1.91
44213--44289
31
2.5
31
85
4
93
36
12
12
37
1.83
44475--44552
39
2.0
39
97
2
149
41
15
12
30
1.85
46875--46967
6
16.5
6
83
12
90
11
0
72
16
1.13
55126--55157
3
11.3
3
87
12
50
31
0
0
68
0.90
60708--60764
23
2.5
23
82
5
62
19
3
19
57
1.54
63809--63834
6
4.3
6
100
0
52
34
15
19
30
1.93
68994--69036
8
5.4
8
86
8
52
55
0
16
27
1.41
68917--69099
90
2.1
86
90
4
294
48
0
14
37
1.45
69011--69168
70
2.2
71
88
4
228
50
0
12
36
1.44
69634--69670
17
2.2
17
90
9
58
48
2
2
45
1.30
81050--81423
165
2.2
165
85
6
495
39
15
15
28
1.88
81732--81756
6
4.2
6
100
0
50
16
0
0
84
0.63
82040--82098
28
2.1
28
93
0
100
35
22
0
42
1.54

Tables:   1

The End!