Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007372.1 Corchorus capsularis cultivar CVL-1 contig07393, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7745
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:1048 original size:30 final size:32

Alignment explanation


    Indices: 1012--1092  Score: 96
    Period size: 33  Copynumber: 2.6  Consensus size: 32

       1002 AAGGATCCAT

                                             
       1012 TGGCCGGTTGT-G-CGCG-GATGCCCCATGCAA
          1 TGGCCGGTTGTGGCCG-GTGATGCCCCATGCAA

                                           * 
       1042 TGGCCGGTTGTGGCCGGTTGATGCCCCATGCGA
          1 TGGCCGGTTGTGGCCGG-TGATGCCCCATGCAA

                 *     *      
       1075 TGGCCAGTTGTTGCCGGT
          1 TGGCCGGTTGTGGCCGGT

       1093 TGCTCCACTC


Statistics
Matches: 44,  Mismatches: 3, Indels: 6
        0.83            0.06        0.11

Matches are distributed among these distances:
  30   11  0.25
  31    2  0.05
  32    3  0.07
  33   28  0.64

ACGTcount: A:0.10, C:0.27, G:0.38, T:0.25


Consensus pattern (32 bp):   
TGGCCGGTTGTGGCCGGTGATGCCCCATGCAA

Found at i:1070 original size:33 final size:33

Alignment explanation


    Indices: 1028--1094  Score: 107
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       1018 GTTGTGCGCG

                               *             
       1028 GATGCCCCATGCAATGGCCGGTTGTGGCCGGTT
          1 GATGCCCCATGCAATGGCCAGTTGTGGCCGGTT

                        *            *       
       1061 GATGCCCCATGCGATGGCCAGTTGTTGCCGGTT
          1 GATGCCCCATGCAATGGCCAGTTGTGGCCGGTT

             
       1094 G
          1 G

       1095 CTCCACTCGA


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  33   31  1.00

ACGTcount: A:0.12, C:0.27, G:0.36, T:0.25


Consensus pattern (33 bp):   
GATGCCCCATGCAATGGCCAGTTGTGGCCGGTT
Done.