Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007375.1 Corchorus capsularis cultivar CVL-1 contig07396, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15428
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:17 original size:2 final size:2

Alignment explanation


    Indices: 11--46  Score: 72
    Period size: 2  Copynumber: 18.0  Consensus size: 2

          1 TAAAGTCACG

                                                                 
         11 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

         47 CTTCATTATC


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
TC

Found at i:11991 original size:6 final size:6

Alignment explanation


    Indices: 11976--12005  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

      11966 TCTCCACTGT

                 *                            
      11976 TTCTTC TTCTTG TTCTTG TTCTTG TTCTTG
          1 TTCTTG TTCTTG TTCTTG TTCTTG TTCTTG

      12006 CTACTTTCTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.00, C:0.20, G:0.13, T:0.67


Consensus pattern (6 bp):   
TTCTTG

Done.