Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007383.1 Corchorus capsularis cultivar CVL-1 contig07404, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52803

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2741--2769
2
14.5
2
100
0
58
48
0
0
51
1.00
6305--6355
14
3.7
14
82
10
52
25
3
0
70
1.04
20350--20380
2
15.5
2
100
0
62
0
0
48
51
1.00
23019--23056
11
3.5
11
85
10
51
57
2
0
39
1.12
23573--23598
5
5.2
5
100
0
52
61
0
0
38
0.96
23757--23794
11
3.5
11
85
10
51
57
2
0
39
1.12
24107--24158
27
1.9
27
96
0
95
28
13
3
53
1.57
28002--28031
2
15.0
2
100
0
60
50
0
0
50
1.00
30779--30835
27
2.1
27
90
0
87
17
15
24
42
1.88
31226--31539
161
1.9
162
85
4
438
40
15
14
29
1.88
31604--31693
45
2.0
45
91
0
144
25
20
18
35
1.95
33586--33616
1
31.0
1
100
0
62
100
0
0
0
0.00
34488--34568
40
2.1
38
81
9
92
45
3
9
40
1.55
34580--34738
31
5.6
30
73
17
88
40
2
16
40
1.62
34660--34738
31
2.6
31
93
2
133
40
2
13
43
1.58
34579--34787
81
2.6
81
81
9
232
38
2
16
42
1.61
34691--34788
52
1.9
51
81
10
119
37
2
13
46
1.54
34819--34917
50
2.0
49
84
5
128
46
4
14
35
1.63
34919--35026
50
2.2
51
86
3
148
40
7
20
31
1.80
35620--35745
48
2.6
48
80
6
141
15
23
21
40
1.90
35635--35745
48
2.3
48
84
1
143
16
21
22
39
1.92
35707--36168
40
11.0
40
74
14
319
15
26
19
38
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35667--36124
88
5.3
85
78
11
368
15
25
19
38
1.91
35708--36124
87
4.9
87
77
14
341
15
26
19
38
1.92
35795--36127
127
2.6
126
85
6
429
15
26
19
38
1.92
40770--40858
44
2.0
44
97
0
169
39
19
14
26
1.90
51120--51174
19
2.7
21
78
18
62
40
3
18
38
1.68
52445--52476
16
2.0
16
93
0
55
0
15
37
46
1.46

Tables:   1

The End!