Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007387.1 Corchorus capsularis cultivar CVL-1 contig07408, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11953

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
125--162
19
2.1
18
85
14
51
76
5
5
13
1.13
2410--2448
20
2.0
20
89
0
60
33
15
15
35
1.89
2452--2639
51
3.7
51
80
5
229
42
3
18
35
1.68
2434--2690
101
2.5
101
91
0
406
42
5
17
35
1.71
2434--2689
51
5.1
50
74
7
212
42
5
17
35
1.71
3338--3543
47
4.4
47
90
3
301
48
9
18
23
1.77
3338--3543
93
2.2
94
89
1
308
48
9
18
23
1.77
3575--3640
31
2.1
31
88
8
98
51
6
16
25
1.67
3758--3806
21
2.3
22
82
10
66
61
2
20
16
1.44
3797--3882
35
2.5
35
84
0
109
50
9
20
19
1.75
3866--3953
21
4.1
21
73
7
79
48
6
22
21
1.73
3934--3989
15
3.9
15
74
9
62
57
5
21
16
1.59
3971--4055
22
3.9
22
82
13
79
54
7
18
20
1.67
8502--8598
50
1.9
51
89
2
151
48
6
8
37
1.58
10232--10267
10
3.6
10
92
0
63
36
22
11
30
1.89
11248--11281
12
2.7
13
86
9
52
26
17
14
41
1.88
11370--11394
1
25.0
1
100
0
50
100
0
0
0
0.00

Tables:   1

The End!