Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007393.1 Corchorus capsularis cultivar CVL-1 contig07414, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11587
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:1887 original size:2 final size:2

Alignment explanation


    Indices: 1880--1912  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       1870 TTAATAATAC

                                                             
       1880 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       1913 GGTAGCAAAA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.