genome.fa.s7398.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007398.1 Corchorus capsularis cultivar CVL-1 contig07419, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49287

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5395--5441	24	2.0	24	82	0	58	6	17	31	44	1.73
5700--5781	42	2.0	42	95	0	146	36	4	19	39	1.73
6273--6377	16	6.5	16	77	14	99	10	20	35	33	1.87
6272--6387	32	3.6	32	88	5	146	11	20	35	32	1.88
6379--6417	16	2.4	16	87	8	53	0	20	48	30	1.50
7555--7591	5	6.7	6	90	9	53	0	0	13	86	0.57
8492--8531	18	2.2	18	90	0	62	77	0	12	10	0.99
8493--8526	6	5.7	6	89	0	50	82	0	14	2	0.79
17092--17154	30	2.1	30	88	5	92	20	34	17	26	1.95
18606--18668	30	2.1	30	88	5	92	22	34	12	30	1.91
20207--20358	36	4.2	36	88	4	216	28	22	9	39	1.85
20340--20412	32	2.3	32	90	2	112	28	30	9	31	1.89
20387--20703	37	8.6	37	94	0	553	24	29	8	37	1.85
20745--21017	76	3.6	76	91	0	440	25	18	11	44	1.83
20713--21022	76	4.1	76	87	2	416	24	18	11	45	1.82
20994--21176	75	2.5	73	84	7	226	26	18	9	46	1.78
20994--21176	37	4.9	37	87	5	228	26	18	9	46	1.78
21202--21299	45	2.2	45	90	7	155	27	12	13	46	1.78
21276--21372	37	2.7	36	85	6	126	26	23	7	42	1.80
21276--21376	36	2.8	37	83	7	127	25	24	7	41	1.82
21427--21535	40	2.7	40	92	0	182	23	20	9	46	1.79
25563--25635	30	2.4	30	93	0	128	17	36	15	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27127--28441	663	2.0	655	96	1	2450	34	16	14	34	1.89
31125--31151	2	13.5	2	100	0	54	48	0	0	51	1.00
31222--31373	62	2.4	62	86	3	214	33	11	14	40	1.83
31222--31402	62	3.0	60	81	10	190	34	12	15	37	1.85
31799--31970	35	4.9	35	87	0	220	36	15	8	39	1.77
31862--31917	16	3.3	16	74	13	58	37	17	5	39	1.73
31900--32165	61	4.5	54	82	14	237	39	18	4	37	1.73
31865--32183	18	16.5	18	68	21	143	38	18	5	36	1.74
31939--32269	61	5.4	61	83	6	434	39	19	4	36	1.72
31959--32646	43	15.9	43	77	11	613	37	19	6	36	1.78
31991--32312	143	2.2	142	82	9	375	39	19	4	36	1.72
32372--32699	143	2.3	143	96	0	611	36	19	7	37	1.79
32528--32594	19	3.3	19	66	18	53	37	19	10	32	1.86
32671--32729	19	3.3	19	67	13	61	37	18	10	33	1.85
32658--32732	35	2.1	35	97	0	141	38	20	8	33	1.81
33511--33943	50	8.4	50	75	9	252	37	15	7	38	1.76
33529--33792	55	5.0	54	78	10	260	40	15	6	37	1.74
33547--33792	109	2.3	103	85	6	323	39	15	6	38	1.74
33549--33843	159	1.9	157	82	4	378	39	15	6	37	1.74
39715--39755	15	2.5	17	81	18	52	78	17	0	4	0.93
39714--39755	16	2.6	16	88	7	59	78	16	0	4	0.91
40195--40237	12	3.7	12	78	3	52	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41132--41210	40	2.0	39	85	7	106	37	13	2	45	1.58
47765--48228	154	2.9	162	85	8	660	50	3	9	37	1.52
47916--48164	77	3.2	77	66	16	201	46	4	10	37	1.59
47883--48289	154	2.6	153	85	7	436	49	3	10	36	1.54
48790--48915	22	5.7	22	77	0	90	35	11	14	38	1.81
48790--48894	44	2.4	44	80	0	120	35	12	12	40	1.81
48905--48963	22	2.6	22	83	5	64	45	8	13	32	1.74
48856--48957	46	2.3	44	81	3	114	42	7	15	34	1.76
48921--48967	22	2.1	22	92	0	76	40	8	21	29	1.83
48989--49057	22	3.1	21	75	8	66	37	14	8	39	1.77

Tables:   1

The End!