Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007399.1 Corchorus capsularis cultivar CVL-1 contig07420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20484

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
820--858
18
2.2
18
85
0
51
28
15
0
56
1.40
2884--3370
167
2.9
164
83
5
620
29
14
17
38
1.89
5873--6174
155
2.0
154
93
0
523
48
3
8
38
1.52
5837--6289
154
2.9
155
80
10
490
49
3
10
36
1.54
6494--6551
22
2.6
22
94
0
98
27
15
12
44
1.82
6769--7024
22
11.5
22
72
8
85
36
12
14
37
1.83
6769--6873
44
2.4
44
82
3
122
36
12
10
40
1.77
6769--6894
66
1.9
66
81
0
153
36
11
12
39
1.79
6835--6941
22
4.7
23
82
4
103
40
8
15
35
1.78
6834--6963
46
2.9
46
79
7
133
37
10
17
33
1.85
6835--6962
68
1.9
68
82
6
161
38
10
17
34
1.83
7083--7128
7
6.3
7
84
2
56
82
2
4
10
0.89
7631--7886
130
2.0
129
90
3
408
27
8
31
32
1.88
11682--11790
32
3.5
32
75
20
106
55
3
16
24
1.58
11698--11759
32
1.9
33
93
3
108
51
3
17
27
1.61
11697--11791
26
3.4
26
83
12
93
53
3
15
27
1.57
11786--11923
14
10.0
14
71
18
85
51
7
21
19
1.71
11786--11875
42
2.1
44
91
4
148
53
6
21
18
1.67
11902--11984
35
2.4
35
81
4
105
48
6
27
18
1.71
11945--12025
22
3.7
22
80
4
76
49
8
24
17
1.74
11967--12072
22
4.8
22
71
9
72
54
5
20
18
1.64
12039--12088
14
3.4
14
80
5
55
56
4
22
18
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12055--12123
22
3.2
22
81
2
86
50
4
23
21
1.66
15939--15970
16
2.0
16
93
0
55
71
6
0
21
1.07

Tables:   1

The End!