Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007402.1 Corchorus capsularis cultivar CVL-1 contig07423, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7952
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36


Found at i:5787 original size:22 final size:21

Alignment explanation


    Indices: 5762--5811  Score: 57
    Period size: 22  Copynumber: 2.3  Consensus size: 21

       5752 TAATTTTTTT

                                   
       5762 TTTTAC-TTGAATGTATTTTATA
          1 TTTTACATT-AAT-TATTTTATA

                       *          
       5784 TTTTACAATTACTTATTTTATA
          1 TTTTAC-ATTAATTATTTTATA

                  
       5806 TTTTAC
          1 TTTTAC

       5812 GATTTTAGCT


Statistics
Matches: 25,  Mismatches: 1, Indels: 4
        0.83            0.03        0.13

Matches are distributed among these distances:
  22   21  0.84
  23    2  0.08
  24    2  0.08

ACGTcount: A:0.28, C:0.08, G:0.04, T:0.60


Consensus pattern (21 bp):   
TTTTACATTAATTATTTTATA
Done.