Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007403.1 Corchorus capsularis cultivar CVL-1 contig07424, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37600

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--60
2
30.0
2
100
0
120
0
50
0
50
1.00
10930--11133
22
9.3
22
77
8
143
39
10
15
34
1.82
10935--11133
44
4.5
44
81
1
220
37
10
16
35
1.83
10930--11133
66
3.1
66
79
5
225
39
10
15
34
1.82
11152--11228
31
2.5
31
100
0
154
20
33
15
29
1.94
11567--11711
22
6.6
22
81
6
150
35
11
16
36
1.84
11566--11723
66
2.4
66
82
7
171
36
10
17
36
1.84
11851--11907
23
2.5
23
85
2
80
47
12
14
26
1.79
20171--20250
35
2.3
35
91
0
124
43
12
16
27
1.83
20226--20273
23
2.1
23
96
0
87
47
10
18
22
1.79
20227--20305
26
3.2
26
89
5
110
46
11
20
21
1.81
20558--20607
12
4.2
12
80
10
57
32
20
4
44
1.70
21496--21556
27
2.4
25
82
17
72
50
0
4
44
1.23
23006--23041
2
18.0
2
100
0
72
50
0
0
50
1.00
23516--23555
19
2.1
19
100
0
80
42
12
20
25
1.86
25386--25632
120
2.1
120
98
0
476
14
36
8
40
1.77
29622--29878
129
2.0
132
86
3
360
37
19
13
29
1.90
31949--32001
22
2.4
22
83
0
61
60
0
39
0
0.97

Tables:   1

The End!