genome.fa.s7404.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007404.1 Corchorus capsularis cultivar CVL-1 contig07425, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52318

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1418--1585	22	7.7	22	66	12	71	35	12	9	42	1.75
3036--3263	22	10.6	22	74	11	161	35	14	9	39	1.79
3036--3263	44	5.3	44	72	12	195	35	14	9	39	1.79
3038--3139	23	4.5	23	85	1	109	39	14	8	37	1.78
3106--3177	37	1.9	38	85	2	101	34	16	8	40	1.79
3251--3300	19	2.6	20	90	9	86	26	20	12	42	1.86
3409--3638	22	10.5	22	71	12	132	33	14	11	40	1.82
3661--3800	22	6.4	21	72	14	97	35	19	8	36	1.82
3676--3800	44	2.8	42	78	9	124	36	19	9	34	1.84
3889--3974	22	4.0	21	77	7	82	36	17	10	36	1.84
4141--4190	19	2.6	19	82	17	52	64	2	4	30	1.23
5650--5839	96	2.0	97	95	1	346	50	1	12	35	1.49
5822--5885	29	2.1	31	91	5	105	45	4	21	28	1.72
5932--5967	2	18.0	2	100	0	72	50	0	0	50	1.00
6130--6196	29	2.3	29	77	10	82	35	13	22	28	1.92
7492--7516	7	3.6	7	100	0	50	0	28	0	72	0.86
12479--12532	12	4.5	12	83	0	72	5	11	59	24	1.53
24591--24815	112	2.0	112	100	0	450	30	9	12	47	1.74
29435--29698	107	2.5	106	90	3	406	41	9	8	40	1.68
29881--30280	220	1.8	220	98	0	773	43	8	8	40	1.65
38411--38445	11	3.2	11	83	0	52	77	17	5	0	0.96
39818--39947	60	2.2	59	86	5	174	37	16	14	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39841--39976	60	2.2	61	85	6	179	38	16	15	29	1.89
40025--40096	32	2.3	31	85	7	92	23	18	12	45	1.83
46345--46392	21	2.2	23	85	7	64	43	20	10	25	1.83
48739--48772	1	34.0	1	100	0	68	0	0	0	100	0.00

Tables:   1

The End!