Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007405.1 Corchorus capsularis cultivar CVL-1 contig07426, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89578

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
214--399
22
8.5
22
72
17
104
34
8
17
40
1.79
240--509
66
4.1
67
73
10
229
34
10
17
38
1.83
366--532
22
7.6
22
78
1
129
36
11
14
36
1.84
278--505
88
2.6
88
75
10
229
34
10
17
37
1.85
214--511
44
6.8
44
70
12
159
34
10
17
37
1.84
3016--3144
33
3.9
33
85
2
179
16
41
27
14
1.87
3201--3282
33
2.5
33
97
0
155
12
34
40
13
1.82
4502--4531
6
5.0
6
91
0
51
30
0
53
16
1.44
12962--12992
3
10.3
3
100
0
62
32
0
0
67
0.91
13514--13585
27
2.5
31
84
13
91
13
22
18
45
1.84
28859--28982
62
2.0
62
100
0
248
30
17
11
40
1.85
29900--29941
21
2.0
21
100
0
84
23
9
28
38
1.86
35131--35285
77
2.0
77
97
0
292
47
18
11
22
1.80
43862--43945
39
2.2
39
93
2
143
35
11
10
41
1.77
44326--44359
17
2.0
17
88
0
50
23
17
29
29
1.97
45454--45517
30
2.2
28
88
8
92
31
10
4
53
1.57
48187--48226
20
2.0
20
95
0
71
37
5
10
47
1.59
48955--49317
179
2.0
181
91
3
599
47
13
12
26
1.78
52768--52811
17
2.6
17
92
0
70
9
36
0
54
1.32
53422--53448
14
1.9
14
100
0
54
48
0
44
7
1.31
63878--64030
76
2.0
76
84
2
200
29
19
15
35
1.93
83981--84006
10
2.6
10
100
0
52
23
7
19
50
1.73

Tables:   1

The End!