Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007407.1 Corchorus capsularis cultivar CVL-1 contig07428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6324

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1405--1445
22
2.0
20
90
9
64
2
14
0
82
0.76
1406--1449
19
2.4
17
75
17
52
2
11
0
86
0.66
4080--4140
22
2.8
22
80
12
63
45
4
18
31
1.70
4097--4167
36
2.0
36
88
0
106
45
2
18
33
1.64
4079--4193
58
2.0
59
87
5
171
46
4
19
29
1.69
4127--4173
22
2.1
22
92
0
76
42
4
19
34
1.70
4090--4173
14
5.9
14
74
18
50
44
4
17
33
1.70
4137--4189
22
2.4
22
84
6
63
50
3
20
24
1.64
4225--4323
52
1.9
51
85
8
137
44
7
20
28
1.77
4288--4337
14
3.4
14
86
10
73
48
8
16
28
1.74
4293--4345
16
3.4
16
84
10
74
47
7
18
26
1.75
4235--4402
22
7.7
21
68
15
74
43
5
20
30
1.75
4229--4382
52
3.0
51
75
12
118
43
6
20
29
1.76
4288--4345
30
1.9
30
92
0
98
46
6
18
27
1.75
4460--4586
8
16.2
8
66
16
61
50
3
19
26
1.63
4450--4498
24
2.0
26
88
8
75
44
4
22
28
1.71
4483--4531
24
2.0
24
88
7
73
59
2
12
26
1.44
4529--4585
24
2.4
23
82
5
69
45
3
22
28
1.69
4606--4636
16
1.9
16
93
0
53
41
3
29
25
1.71

Tables:   1

The End!