Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007410.1 Corchorus capsularis cultivar CVL-1 contig07431, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43031

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
794--839
20
2.2
21
92
3
76
50
17
6
26
1.70
2221--2246
13
2.0
13
100
0
52
15
7
23
53
1.67
8678--8719
21
2.1
20
86
8
59
64
7
4
23
1.38
15477--15743
37
7.2
37
80
8
283
24
14
15
45
1.84
15477--15746
74
3.6
74
91
0
432
24
15
15
45
1.84
19725--19884
83
1.9
82
92
3
268
40
18
15
26
1.89
20127--20224
35
2.8
35
87
0
151
25
21
16
36
1.94
21563--21665
54
1.9
54
95
0
188
36
13
20
29
1.91
21685--21745
29
2.1
29
90
0
95
31
14
21
32
1.93
21744--21815
33
2.2
33
92
0
117
27
19
16
36
1.93
24618--24851
78
3.0
78
91
3
391
40
14
22
23
1.90
25498--25566
32
2.2
32
80
12
81
20
26
21
31
1.98
27662--27971
153
2.0
156
90
3
493
31
21
14
32
1.93
29231--29273
6
7.3
6
80
15
54
18
32
32
16
1.93
32802--32827
11
2.4
11
100
0
52
46
0
19
34
1.50
33389--33438
20
2.4
21
83
12
68
52
0
6
42
1.26
33398--33495
20
5.0
20
73
13
78
50
0
6
43
1.27
41899--41939
21
2.1
18
86
13
55
24
26
12
36
1.91

Tables:   1

The End!