Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007411.1 Corchorus capsularis cultivar CVL-1 contig07432, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36049

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12122--12157
2
18.0
2
100
0
72
50
0
0
50
1.00
15547--15589
11
3.9
11
90
0
68
46
6
4
41
1.51
15543--15589
22
2.1
22
96
0
85
46
6
4
42
1.48
16523--16567
19
2.5
17
85
7
63
35
2
11
51
1.50
17617--17675
16
3.8
16
79
4
75
38
38
15
6
1.74
18980--19040
31
2.0
31
100
0
122
19
14
22
42
1.88
19039--19070
16
2.0
16
93
0
55
9
6
21
62
1.47
19608--19638
16
1.9
16
93
0
53
51
38
9
0
1.35
19672--19728
15
3.6
15
75
17
53
40
36
15
7
1.75
29158--29707
274
2.0
274
98
0
1055
32
13
20
34
1.91
29933--29976
18
2.6
17
82
7
54
6
2
13
77
1.07
32027--32059
12
2.5
13
90
9
50
81
0
18
0
0.68
33586--33723
69
2.0
69
100
0
276
37
14
7
40
1.74

Tables:   1

The End!