Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007412.1 Corchorus capsularis cultivar CVL-1 contig07433, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35061

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19--54
18
2.0
18
88
0
54
50
25
13
11
1.75
1608--1634
13
2.1
13
100
0
54
44
14
0
40
1.46
1748--1789
19
2.3
18
84
8
57
61
0
4
33
1.17
1753--1789
19
2.0
19
89
5
58
64
0
2
32
1.07
1961--2005
15
2.9
15
83
6
54
33
0
13
53
1.40
3702--3774
30
2.4
30
86
0
101
35
26
17
20
1.95
4940--4972
16
1.9
18
88
11
52
36
27
6
30
1.81
7281--7310
9
3.3
9
100
0
60
33
23
13
30
1.93
12887--12995
22
4.8
22
76
12
87
40
11
8
39
1.72
12932--13009
22
3.5
21
75
6
66
37
10
7
44
1.67
13018--13078
22
2.7
23
80
7
63
26
9
9
54
1.64
13093--14100
44
23.3
44
66
15
309
36
16
10
36
1.83
13093--13238
22
6.7
21
70
18
86
36
14
13
35
1.86
13254--13433
21
8.4
22
74
12
81
38
16
8
36
1.80
13254--13881
22
29.5
21
68
15
235
36
17
10
35
1.83
13328--13393
21
3.1
21
84
2
87
30
18
12
39
1.87
13316--14100
22
36.9
20
66
18
135
35
16
9
37
1.83
14040--14126
44
2.0
44
81
4
104
35
18
8
37
1.80
14413--14542
22
5.9
22
70
5
73
36
8
15
39
1.78
15299--15357
22
2.7
22
89
0
91
30
10
18
40
1.84
15459--15517
22
2.7
22
84
5
75
42
6
8
42
1.61
18049--18110
30
2.1
30
93
6
108
27
17
35
19
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22328--22372
13
3.5
13
90
3
74
55
8
13
22
1.65
22328--22380
25
2.1
25
89
6
81
58
9
11
20
1.60
24275--24311
18
2.1
18
89
0
56
43
0
2
54
1.14
28073--28208
71
1.9
71
93
0
236
45
22
5
26
1.75
32239--32280
17
2.5
17
80
3
50
14
14
2
69
1.30

Tables:   1

The End!