genome.fa.s7416.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007416.1 Corchorus capsularis cultivar CVL-1 contig07437, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34275

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1419--1463	23	2.0	23	86	0	63	15	6	0	77	0.96
1419--1466	24	2.0	23	84	4	60	16	8	0	75	1.04
1413--1469	23	2.3	24	76	11	62	17	10	0	71	1.12
3232--3382	36	4.2	36	93	0	248	28	19	10	41	1.84
3361--3469	32	3.2	32	81	13	121	26	24	10	38	1.87
3409--3467	18	3.2	18	66	4	55	25	25	8	40	1.83
3414--3475	19	3.3	19	68	4	63	20	27	8	43	1.80
3461--3566	36	2.9	34	78	10	104	19	14	16	50	1.79
3514--3597	36	2.4	36	82	7	93	23	13	14	48	1.78
3583--3821	41	5.7	40	92	4	361	22	20	10	46	1.80
3546--3835	82	3.6	80	84	10	294	24	19	10	45	1.82
3811--4291	37	12.8	37	75	15	165	27	19	8	44	1.80
3546--3835	123	2.4	120	84	10	346	24	19	10	45	1.82
3811--3942	71	1.9	71	90	0	210	26	16	9	47	1.76
3917--4150	41	5.7	41	85	3	249	29	18	10	41	1.83
4150--4332	37	4.8	37	82	7	199	25	21	7	45	1.77
4150--4366	37	5.6	41	76	16	135	25	21	7	45	1.78
4341--4399	28	2.1	27	87	9	82	32	23	5	38	1.77
4307--4713	82	5.5	70	74	18	209	25	18	12	43	1.85
4370--4607	41	5.9	41	85	2	279	23	18	14	43	1.87
4572--4638	29	2.2	30	86	5	100	29	17	8	43	1.80
4578--4718	73	1.9	73	97	0	264	27	15	9	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4650--4708	29	2.0	29	90	6	91	28	16	8	45	1.77
8260--8306	22	2.1	22	92	0	76	36	25	17	21	1.94
12841--12870	2	15.0	2	100	0	60	50	0	0	50	1.00
13591--13735	36	4.0	36	91	0	218	26	19	10	43	1.83
13598--13825	36	6.6	32	80	8	125	25	22	10	40	1.87
13762--13820	18	3.2	18	66	4	55	25	25	8	40	1.83
13761--13841	37	2.2	37	97	0	153	27	24	8	39	1.84
13849--13965	36	3.3	34	80	11	119	21	14	14	49	1.79
13973--14985	41	24.7	40	90	4	1435	22	21	10	46	1.81
14975--15109	37	3.7	37	84	5	168	23	18	10	47	1.79
15081--15219	41	3.3	40	78	6	125	28	17	7	46	1.75
15111--15219	41	2.6	41	85	1	146	30	15	6	47	1.70
15275--15534	37	6.7	36	77	14	218	26	21	8	43	1.80
15360--15448	45	2.0	45	84	4	117	25	24	8	40	1.84
15323--15485	82	2.0	82	93	0	281	25	23	7	42	1.80
15465--15576	40	2.7	41	86	4	136	25	19	10	44	1.83
15548--15606	28	2.1	27	87	9	82	32	23	5	38	1.77
15959--16004	2	24.0	2	82	8	51	52	0	4	43	1.21
16015--16052	20	1.9	19	89	5	58	44	0	2	52	1.14
16254--16446	41	4.6	42	84	8	227	22	16	15	45	1.84
21939--21997	31	1.9	31	89	0	91	38	11	15	33	1.84
23627--23772	36	4.2	36	83	10	203	30	20	7	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23636--23772	68	2.0	69	91	5	222	29	21	7	41	1.80
24937--24971	17	2.1	17	89	5	54	31	5	0	62	1.18
25309--25389	36	2.2	36	80	4	92	19	14	14	50	1.78
25322--25425	36	2.9	34	81	8	93	20	10	17	51	1.74
25363--25446	36	2.4	36	82	7	93	23	13	15	47	1.80
25432--25947	41	12.7	41	88	3	733	21	20	9	47	1.79
25430--25909	159	3.0	160	89	2	719	21	21	9	47	1.79
25937--26304	37	9.8	37	86	5	479	26	19	9	44	1.80
25932--26265	150	2.2	148	87	4	474	26	19	8	45	1.79
25937--26304	188	2.0	188	90	1	576	26	19	9	44	1.80
26280--26704	41	10.9	41	82	10	380	27	14	12	45	1.80
26240--26584	122	2.8	118	82	8	399	27	16	12	44	1.83
26280--26578	163	1.9	159	88	4	456	28	15	11	44	1.81
25940--26586	37	16.7	37	80	10	363	27	17	10	44	1.81
26553--26621	29	2.3	31	82	5	88	26	14	8	50	1.71
26584--26707	39	3.2	39	92	0	203	23	12	12	50	1.75

Tables:   1

The End!