Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007420.1 Corchorus capsularis cultivar CVL-1 contig07441, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 26671
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30


Found at i:24058 original size:15 final size:15

Alignment explanation


    Indices: 24038--24082  Score: 74
    Period size: 15  Copynumber: 3.1  Consensus size: 15

      24028 CCATACATAC

                           
      24038 CCAAATATTCAAATA
          1 CCAAATATTCAAATA

                    *      
      24053 CCAAATA-CCAAATA
          1 CCAAATATTCAAATA

                           
      24067 CCAAATATTCAAATA
          1 CCAAATATTCAAATA

             
      24082 C
          1 C

      24083 TCATCAGATT


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
  14   13  0.48
  15   14  0.52

ACGTcount: A:0.53, C:0.24, G:0.00, T:0.22


Consensus pattern (15 bp):   
CCAAATATTCAAATA

Found at i:24059 original size:7 final size:7

Alignment explanation


    Indices: 24047--24073  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

      24037 CCCAAATATT

                   
      24047 CAAATAC
          1 CAAATAC

                   
      24054 CAAATAC
          1 CAAATAC

                   
      24061 CAAATAC
          1 CAAATAC

                  
      24068 CAAATA
          1 CAAATA

      24074 TTCAAATACT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.59, C:0.26, G:0.00, T:0.15


Consensus pattern (7 bp):   
CAAATAC

Done.