Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007433.1 Corchorus capsularis cultivar CVL-1 contig07454, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10616
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:2396 original size:5 final size:5

Alignment explanation


    Indices: 2386--2414  Score: 58
    Period size: 5  Copynumber: 5.8  Consensus size: 5

       2376 CTTGCTTAAA

                                              
       2386 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
          1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA

       2415 ATATTAATTA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17


Consensus pattern (5 bp):   
AAAAT

Found at i:3511 original size:21 final size:21

Alignment explanation


    Indices: 3485--3541  Score: 80
    Period size: 21  Copynumber: 2.8  Consensus size: 21

       3475 GCACTGGAGT

                   *   * *       
       3485 ACATGGGTCGCGAGGCAAACC
          1 ACATGGGGCGCCAAGCAAACC

                                 
       3506 ACATGGGGCGCCAAGCAAACC
          1 ACATGGGGCGCCAAGCAAACC

                            
       3527 ACAT-GGGCGCCAAGC
          1 ACATGGGGCGCCAAGC

       3542 GCTAGTCGAG


Statistics
Matches: 33,  Mismatches: 3, Indels: 1
        0.89            0.08        0.03

Matches are distributed among these distances:
  20   11  0.33
  21   22  0.67

ACGTcount: A:0.30, C:0.32, G:0.32, T:0.07


Consensus pattern (21 bp):   
ACATGGGGCGCCAAGCAAACC

Done.