Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007434.1 Corchorus capsularis cultivar CVL-1 contig07455, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20390

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27--65
20
2.0
20
89
0
60
41
20
10
28
1.85
567--641
28
2.7
27
84
9
98
46
22
14
16
1.83
903--980
39
2.0
39
84
0
102
42
14
14
29
1.84
1154--1213
22
2.5
25
76
15
72
26
21
25
26
2.00
1031--1374
161
2.1
166
88
5
511
32
19
20
27
1.97
1313--1383
22
3.0
24
70
17
76
26
21
23
28
1.99
1315--1394
25
3.3
25
72
10
85
27
22
25
25
2.00
1313--1421
47
2.3
47
95
0
191
24
21
25
28
1.99
1313--1416
22
4.5
22
69
10
64
24
21
26
27
1.99
2687--2745
9
6.8
9
77
14
70
11
13
0
74
1.07
2672--2745
27
2.8
25
81
15
96
10
14
0
74
1.07
2679--2735
18
3.2
19
79
16
68
10
14
0
75
1.05
3046--3072
8
3.4
8
100
0
54
14
0
0
85
0.61
3049--3117
13
5.0
13
70
18
50
14
0
7
78
0.96
3276--3444
83
2.0
84
98
1
331
33
16
17
31
1.93
3421--3451
16
2.0
15
93
6
53
38
9
6
45
1.63
3961--3989
6
4.8
6
100
0
58
0
0
31
68
0.89
8525--8558
11
3.1
11
82
0
50
41
8
2
47
1.50
10927--10972
23
2.0
23
87
8
67
36
6
28
28
1.82
11702--11757
27
2.1
27
96
0
103
17
16
21
44
1.86
12304--12342
20
2.0
20
89
0
60
41
20
10
28
1.85
12844--12920
29
2.8
27
79
12
93
46
23
14
15
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14248--14277
2
15.0
2
100
0
60
50
0
0
50
1.00
17469--17545
27
2.9
27
82
9
104
36
25
18
19
1.94
19880--19911
6
5.5
6
96
3
57
56
15
0
28
1.40
19908--19952
13
3.5
13
84
3
65
55
6
13
24
1.62
19908--19960
25
2.1
25
86
6
72
58
7
11
22
1.57

Tables:   1

The End!