Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007438.1 Corchorus capsularis cultivar CVL-1 contig07459, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49098

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--124
51
2.3
50
86
4
164
38
13
5
43
1.66
3000--3073
27
2.7
27
91
0
112
37
24
20
17
1.93
4732--4762
2
15.5
2
100
0
62
51
0
0
48
1.00
8046--8145
46
2.2
46
100
0
200
23
24
11
42
1.86
8647--8682
18
2.1
17
94
5
63
63
8
16
11
1.49
9268--9306
19
2.1
19
90
4
62
33
20
2
43
1.65
9259--9320
11
5.9
11
81
12
60
37
17
3
41
1.66
9259--9319
22
2.9
22
76
18
67
36
18
3
42
1.66
10378--10415
18
2.1
19
90
5
60
36
13
5
44
1.66
10895--10933
21
1.9
19
85
10
51
43
20
10
25
1.83
13018--13076
25
2.4
25
81
13
77
52
8
6
32
1.58
24997--25021
6
4.2
6
100
0
50
16
16
52
16
1.76
29098--29133
18
2.1
17
94
5
63
63
8
16
11
1.49
29725--29763
19
2.1
19
90
4
62
33
20
2
43
1.65
29716--29777
11
5.9
11
81
12
60
37
17
3
41
1.66
29716--29776
22
2.9
22
76
18
67
36
18
3
42
1.66
32741--32773
7
4.9
7
85
7
50
24
0
3
72
0.98
33599--33701
37
2.6
41
86
7
144
28
17
10
43
1.82
33839--33907
25
2.8
26
82
8
90
11
23
0
65
1.25
34664--34765
32
3.1
32
77
13
89
30
16
5
47
1.71
34771--34891
36
3.4
35
82
7
136
24
20
11
42
1.85
34791--34890
36
2.8
37
89
4
150
25
20
10
45
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34793--34931
36
3.9
35
86
0
134
27
20
8
43
1.80
34936--35175
11
22.1
11
70
10
100
19
20
10
50
1.76
34947--35173
65
3.5
65
94
0
382
18
20
10
49
1.77
35315--35427
49
2.3
49
80
7
122
23
19
5
52
1.66

Tables:   1

The End!