Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000744.1 Corchorus capsularis cultivar CVL-1 contig00744, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1696
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1250 original size:23 final size:25

Alignment explanation


    Indices: 1206--1252  Score: 80
    Period size: 23  Copynumber: 2.0  Consensus size: 25

       1196 AACCTTCTAG

                                     
       1206 CGCAAATAGCTTATTAGCGCAAAGC
          1 CGCAAATAGCTTATTAGCGCAAAGC

                                    
       1231 CGCAAATAGC-TA-TAGCGCAAAG
          1 CGCAAATAGCTTATTAGCGCAAAG

       1253 TGTGTGTGGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  23   10  0.45
  24    2  0.09
  25   10  0.45

ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17


Consensus pattern (25 bp):   
CGCAAATAGCTTATTAGCGCAAAGC
Done.