Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007447.1 Corchorus capsularis cultivar CVL-1 contig07468, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18425
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:1500 original size:20 final size:21

Alignment explanation


    Indices: 1464--1503  Score: 64
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       1454 TTACAAAGAA

                                 
       1464 AACTCACAATTCCGTGAGAGC
          1 AACTCACAATTCCGTGAGAGC

                        *       
       1485 AACTCAC-ATTCGGTGAGAG
          1 AACTCACAATTCCGTGAGAG

       1504 TAGAATCCAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20   11  0.61
  21    7  0.39

ACGTcount: A:0.33, C:0.25, G:0.23, T:0.20


Consensus pattern (21 bp):   
AACTCACAATTCCGTGAGAGC

Found at i:7734 original size:2 final size:2

Alignment explanation


    Indices: 7727--7757  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       7717 GTTCTCACTC

                                                   *      
       7727 CT CT CT CT CT CT CT CT CT CT CT CT CT TT CT C
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C

       7758 AGCTTCCAGT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
CT

Done.