Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007448.1 Corchorus capsularis cultivar CVL-1 contig07469, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104101

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1298--1343
13
3.0
16
75
21
53
13
26
6
54
1.62
11212--11296
36
2.3
37
83
2
100
31
22
14
31
1.93
15200--15267
35
1.9
35
100
0
136
29
19
19
32
1.96
20412--20482
37
1.9
37
100
0
142
39
14
16
29
1.88
26626--26668
22
2.0
22
85
0
59
81
2
4
11
0.93
28349--28389
2
21.0
2
80
14
50
46
4
0
48
1.23
31103--31131
2
14.5
2
100
0
58
48
0
0
51
1.00
31674--31698
12
2.1
12
100
0
50
24
36
16
24
1.94
39943--40028
1
86.0
1
78
0
82
88
11
0
0
0.52
58362--58456
46
2.1
46
100
0
190
32
18
14
33
1.92
58992--59266
109
2.5
109
92
3
444
38
12
1
48
1.51
61672--61701
11
2.7
11
100
0
60
0
26
13
60
1.34
67021--67110
47
1.9
47
93
0
153
25
14
11
48
1.76
75301--75438
31
4.5
31
81
0
159
33
25
23
18
1.97
75301--75441
62
2.3
62
86
2
203
32
24
24
18
1.97
76484--76516
7
4.6
7
96
3
57
30
0
0
69
0.88
80476--80520
23
2.0
23
95
0
81
51
0
8
40
1.33
89837--89934
44
2.2
44
94
0
178
25
25
17
31
1.97
91123--91231
35
3.1
35
67
7
94
49
22
10
17
1.76

Tables:   1

The End!