Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007449.1 Corchorus capsularis cultivar CVL-1 contig07470, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5156
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:548 original size:13 final size:13

Alignment explanation


    Indices: 519--565  Score: 78
    Period size: 13  Copynumber: 3.7  Consensus size: 13

        509 AATCTAAATC

                         
        519 TAAAGCAGATT-A
          1 TAAAGCAGATTAA

                   *     
        531 TAAAGCAAATTAA
          1 TAAAGCAGATTAA

                         
        544 TAAAGCAGATTAA
          1 TAAAGCAGATTAA

                     
        557 TAAAGCAGA
          1 TAAAGCAGA

        566 CAATAATTAT


Statistics
Matches: 32,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  12   10  0.31
  13   22  0.69

ACGTcount: A:0.55, C:0.09, G:0.15, T:0.21


Consensus pattern (13 bp):   
TAAAGCAGATTAA

Found at i:570 original size:25 final size:25

Alignment explanation


    Indices: 519--571  Score: 72
    Period size: 25  Copynumber: 2.1  Consensus size: 25

        509 AATCTAAATC

                                  *  
        519 TAAAGCAGATTATAAAGCAAATTAA
          1 TAAAGCAGATTATAAAGCAAATCAA

                                *     
        544 TAAAGCAGATTAATAAAGCAGA-CAA
          1 TAAAGCAGATT-ATAAAGCAAATCAA

               
        569 TAA
          1 TAA

        572 TTATAAAGCA


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  25   16  0.64
  26    9  0.36

ACGTcount: A:0.57, C:0.09, G:0.13, T:0.21


Consensus pattern (25 bp):   
TAAAGCAGATTATAAAGCAAATCAA
Done.