Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007452.1 Corchorus capsularis cultivar CVL-1 contig07473, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31451

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
820--851
16
2.0
17
88
11
50
56
6
0
37
1.25
1217--1263
22
2.1
22
84
0
58
44
0
6
48
1.28
4467--4528
23
2.6
24
76
20
67
29
40
25
4
1.76
4491--4601
16
6.9
16
79
8
127
34
36
19
9
1.84
4467--4601
48
2.8
47
80
8
139
32
37
22
8
1.83
4491--4604
32
3.6
32
86
4
151
34
36
20
8
1.83
5203--5282
9
9.9
9
68
26
63
32
36
22
8
1.85
5196--5281
16
5.4
16
87
9
124
31
37
23
8
1.84
5196--5282
31
2.8
31
89
8
124
32
36
22
8
1.84
8821--9278
230
2.0
230
97
0
864
42
19
11
26
1.85
17947--18005
25
2.5
24
86
5
75
37
20
0
42
1.52
18015--18082
26
2.6
26
90
0
109
54
10
0
35
1.35
18021--18113
11
7.1
14
67
21
58
55
8
1
34
1.37
18015--18132
52
2.4
51
79
13
122
54
10
0
34
1.40
23803--23986
48
3.8
48
90
3
262
23
32
17
26
1.97
23803--23978
97
1.8
97
88
1
273
23
33
18
25
1.97
23986--24204
49
4.5
48
76
8
183
21
25
19
32
1.97
23860--24105
131
1.9
129
83
7
318
23
29
19
28
1.98
24981--25138
70
2.3
70
89
0
235
26
26
18
28
1.98
25248--25386
47
2.9
47
92
2
233
20
25
19
34
1.96
25776--25842
22
3.1
22
65
26
61
29
16
13
40
1.87
25770--25857
43
2.0
43
95
0
158
30
18
14
36
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25861--25915
22
2.6
21
82
5
65
40
16
0
43
1.48
25930--25970
21
2.0
21
90
0
64
41
14
2
41
1.59
25867--26000
56
2.4
57
86
3
173
39
16
5
38
1.71
25965--26414
43
9.8
43
82
13
542
36
17
7
38
1.77
25999--26497
142
3.6
141
93
4
834
36
17
7
38
1.77
26394--26439
21
2.2
21
84
0
56
39
15
2
43
1.59
26370--26476
56
1.9
56
90
3
171
38
15
4
41
1.69
26426--26500
35
2.1
35
95
0
132
38
16
8
37
1.78
26447--26497
19
2.8
19
71
11
54
37
13
11
37
1.82
27452--27584
50
2.7
49
83
1
158
35
17
6
41
1.74
27473--27580
49
2.2
50
84
1
137
37
18
5
38
1.74
28466--28510
23
2.0
23
81
0
54
13
8
6
71
1.31
28476--28517
21
1.9
22
85
9
59
14
11
4
69
1.34
30539--30616
27
2.9
27
88
5
104
37
21
23
17
1.94

Tables:   1

The End!