Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007458.1 Corchorus capsularis cultivar CVL-1 contig07479, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35051

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17453--17478
12
2.2
12
100
0
52
30
15
11
42
1.82
19973--20095
23
5.5
23
80
7
114
34
14
5
44
1.69
19973--20097
45
2.8
46
74
15
118
34
14
5
45
1.68
22843--22892
2
26.0
2
82
15
61
48
0
4
48
1.20
23273--23363
45
2.0
45
93
0
155
6
27
27
38
1.81
30618--30857
129
1.9
130
85
6
335
30
19
15
35
1.92
31171--31241
31
2.2
32
87
10
108
35
8
16
39
1.79
31184--31243
31
1.9
31
100
0
120
35
10
16
38
1.82
31272--31342
37
1.9
37
94
0
124
38
8
16
36
1.80
32031--32069
19
2.1
19
100
0
78
38
15
25
20
1.92
32549--32610
31
2.0
32
90
3
99
40
6
19
33
1.77

Tables:   1

The End!