Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007462.1 Corchorus capsularis cultivar CVL-1 contig07483, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5401
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33


Found at i:4502 original size:21 final size:22

Alignment explanation


    Indices: 4478--4520  Score: 70
    Period size: 23  Copynumber: 2.0  Consensus size: 22

       4468 ATGTATATAT

                                  
       4478 GAAT-TGTATATAGGTTTAGTG
          1 GAATATGTATATAGGTTTAGTG

                                  
       4499 GAATAGTGTATATAGGTTTAGT
          1 GAATA-TGTATATAGGTTTAGT

       4521 ATTGGATCCC


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  21    4  0.20
  23   16  0.80

ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42


Consensus pattern (22 bp):   
GAATATGTATATAGGTTTAGTG
Done.