Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007463.1 Corchorus capsularis cultivar CVL-1 contig07484, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22692

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
177--203
14
1.9
14
100
0
54
22
22
18
37
1.95
1175--1254
27
3.0
28
84
10
89
15
20
0
65
1.28
1210--1279
27
2.6
27
80
14
74
14
21
1
62
1.39
1282--1533
22
11.8
22
76
12
226
23
20
5
51
1.68
1408--1571
43
3.8
43
77
14
160
21
18
5
54
1.64
1503--1558
28
2.0
28
89
6
87
23
17
3
55
1.58
1408--1572
22
7.6
22
75
14
121
21
19
5
53
1.64
1561--1659
35
2.9
35
90
1
146
18
25
3
53
1.58
1774--1859
32
2.6
32
85
5
109
19
17
5
56
1.60
1732--1999
105
2.5
104
70
9
229
25
19
5
49
1.70
1871--2037
31
4.7
34
71
20
110
27
16
7
48
1.72
1871--2037
69
2.3
71
84
9
207
27
16
7
48
1.72
2070--2252
36
5.5
33
78
11
160
15
20
4
58
1.56
2070--2252
31
5.6
32
79
11
174
15
20
4
58
1.56
2105--2204
16
6.5
16
76
11
102
14
21
5
60
1.53
2102--2252
62
2.3
66
85
7
202
17
21
4
56
1.58
2050--2294
98
2.5
95
80
8
287
17
20
5
56
1.60
12824--12855
2
16.0
2
100
0
64
50
0
0
50
1.00
13259--13582
178
1.8
178
83
2
436
36
13
14
35
1.86
13793--13832
21
1.9
21
94
0
71
42
0
7
50
1.30
20950--21031
40
2.0
40
97
0
155
32
10
14
41
1.81

Tables:   1

The End!