Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007469.1 Corchorus capsularis cultivar CVL-1 contig07490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51349

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4459--4694
70
3.2
70
79
15
260
37
11
0
50
1.45
4528--4700
81
2.2
78
92
3
283
37
13
0
48
1.47
5385--5413
11
2.5
12
94
5
51
82
3
13
0
0.79
6474--6553
41
2.0
40
85
7
108
27
11
22
38
1.88
6406--6547
67
2.1
66
80
8
153
26
9
23
40
1.86
6469--6646
94
1.8
93
82
11
225
26
10
24
38
1.88
6928--6959
16
2.0
16
100
0
64
12
18
18
50
1.78
7723--7841
59
2.0
60
90
1
186
17
24
14
43
1.86
9666--9745
41
2.0
40
85
7
108
27
11
22
38
1.88
9598--9739
67
2.1
66
80
8
153
26
9
23
40
1.86
9661--9838
94
1.8
93
82
11
225
26
10
24
38
1.88
10294--11019
371
2.0
371
99
0
1443
35
12
14
36
1.85
11147--11442
109
2.7
109
90
4
441
37
10
1
50
1.48
12887--12926
2
20.0
2
100
0
80
50
0
0
50
1.00
15642--15678
3
12.0
3
88
5
56
64
2
0
32
1.07
22486--22528
12
3.6
12
87
0
68
41
0
2
55
1.12
23262--23290
2
14.5
2
100
0
58
51
0
0
48
1.00
24604--24654
25
2.0
25
92
0
84
66
1
3
27
1.20
26130--26174
19
2.3
20
85
11
58
31
6
15
46
1.72
26140--26183
20
2.3
19
84
4
61
38
4
15
40
1.68
26583--26732
45
3.3
45
87
0
210
43
17
11
28
1.83
28354--28391
19
2.0
19
89
0
58
28
5
5
60
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39449--39506
17
3.6
16
78
15
57
3
25
0
70
1.03
39449--39509
18
3.5
17
80
8
61
3
26
0
70
1.02
39450--39522
21
3.5
21
74
9
69
2
30
0
67
1.05
41345--41415
27
2.6
27
88
0
97
46
22
12
18
1.82
50271--50387
58
2.0
58
90
1
182
11
11
28
49
1.72
50666--50707
17
2.3
19
92
8
70
19
11
0
69
1.19

Tables:   1

The End!