Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007471.1 Corchorus capsularis cultivar CVL-1 contig07492, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54547

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1445--1479
8
4.2
8
88
3
52
74
11
2
11
1.18
6717--6996
140
2.0
140
96
0
515
26
18
17
37
1.93
16993--17100
39
2.8
40
85
4
141
43
26
11
18
1.83
17915--17964
21
2.4
20
80
12
57
50
24
6
20
1.70
20928--20969
21
2.0
21
100
0
84
23
14
28
33
1.94
22382--22430
26
1.9
25
84
12
64
16
22
10
51
1.74
24245--24329
35
2.4
34
79
9
91
25
30
15
28
1.96
29389--29454
33
2.1
32
88
8
100
48
4
30
16
1.66
30347--30422
39
1.9
39
86
0
107
32
25
23
18
1.97
30598--30767
90
1.9
90
92
0
286
27
20
29
22
1.98
33314--33362
21
2.3
21
85
0
62
10
32
28
28
1.90
46115--46168
22
2.5
22
87
6
74
7
7
7
77
1.12
47304--47344
21
1.9
22
85
5
57
39
14
29
17
1.89
49831--49875
22
2.2
20
84
8
54
24
24
2
48
1.62
50198--50432
128
1.8
128
97
0
443
28
20
23
27
1.99

Tables:   1

The End!