Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007472.1 Corchorus capsularis cultivar CVL-1 contig07493, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20202

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--44
2
22.0
2
100
0
88
50
0
0
50
1.00
1635--1667
17
1.9
17
93
0
57
27
9
3
60
1.42
2263--2459
22
9.0
22
70
12
109
38
16
6
38
1.75
2328--2887
22
25.5
22
66
14
176
37
16
9
36
1.81
2441--2547
46
2.3
46
84
4
137
37
15
14
31
1.89
2939--3057
22
5.5
22
73
5
73
39
13
10
36
1.78
3141--3222
21
3.9
21
77
15
71
32
19
12
35
1.89
3096--3232
22
6.3
21
68
16
66
36
17
12
33
1.87
3301--3398
22
4.3
21
76
10
79
40
13
7
38
1.72
3316--3409
22
4.1
22
74
18
77
41
18
5
35
1.73
5868--5906
16
2.4
16
86
0
51
5
12
30
51
1.62
5878--5908
16
1.9
16
100
0
62
6
6
25
61
1.45
9552--9649
48
2.0
48
88
3
144
20
20
38
20
1.93
9980--10020
18
2.2
18
86
8
55
19
2
0
78
0.87
9994--10023
11
2.8
11
95
5
53
13
0
0
86
0.57
9977--10023
21
2.1
23
84
11
62
19
2
0
78
0.85
19016--19057
13
3.2
13
77
16
50
14
16
47
21
1.82
19139--19236
48
2.0
48
88
3
144
19
19
39
21
1.92

Tables:   1

The End!