Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007473.1 Corchorus capsularis cultivar CVL-1 contig07494, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51223

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3071--3205
67
2.0
66
89
1
207
28
17
17
35
1.93
3139--3489
166
2.1
167
84
5
449
29
15
17
37
1.91
4215--4304
16
5.6
16
82
3
110
51
28
13
6
1.66
4453--4506
16
3.4
16
82
5
74
40
31
11
16
1.84
4465--4512
15
3.1
15
82
5
69
41
33
8
16
1.78
4443--4528
31
2.7
32
85
3
111
40
38
10
10
1.74
15442--15629
60
3.1
60
81
4
200
43
23
3
29
1.69
16517--16594
29
2.7
29
85
2
111
15
25
17
41
1.89
16746--16819
29
2.6
29
78
4
87
47
17
16
18
1.83
18334--18390
30
1.9
30
88
0
87
28
40
7
24
1.81
23978--24010
15
2.3
15
84
5
50
60
0
36
3
1.12
24520--24552
14
2.4
14
90
5
50
12
12
30
45
1.78
25120--25297
81
2.2
81
87
3
250
26
6
36
29
1.82
29975--30005
16
1.9
16
100
0
62
25
51
6
16
1.68
33986--34143
74
2.2
73
91
1
253
18
29
10
41
1.83
35442--35489
24
2.0
24
100
0
96
25
25
8
41
1.83
36260--36288
1
29.0
1
100
0
58
0
0
0
100
0.00
41200--41224
3
8.3
3
100
0
50
0
0
36
64
0.94
42483--42526
15
3.2
15
75
24
60
36
0
11
52
1.38
42475--42526
26
2.0
26
96
0
95
34
1
11
51
1.49
42536--42586
25
2.1
24
85
7
68
43
1
23
31
1.65
43135--43171
20
1.9
18
89
10
56
81
0
16
2
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43135--43172
19
2.0
20
89
5
60
81
0
15
2
0.80
44454--44530
33
2.3
33
77
4
84
9
27
40
23
1.84
49930--49958
5
6.0
5
92
8
51
17
0
0
82
0.66
50037--50070
8
4.1
8
85
7
50
23
2
14
58
1.50
51022--51085
33
1.9
33
93
0
110
12
28
35
23
1.91

Tables:   1

The End!