Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007474.1 Corchorus capsularis cultivar CVL-1 contig07495, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7614
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:458 original size:15 final size:15

Alignment explanation


    Indices: 438--467  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        428 ATCAGGCTGC

                      *    
        438 CACGATACACGATAT
          1 CACGATACACAATAT

                           
        453 CACGATACACAATAT
          1 CACGATACACAATAT

        468 TTCAACCGAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20


Consensus pattern (15 bp):   
CACGATACACAATAT
Done.