Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007476.1 Corchorus capsularis cultivar CVL-1 contig07497, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29763

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2011--2136
62
2.0
62
96
0
234
37
15
14
33
1.87
2024--2125
30
3.3
31
65
21
79
40
12
14
32
1.84
2373--2450
4
19.5
4
100
0
156
24
0
25
50
1.50
3290--3314
9
2.8
9
100
0
50
48
0
8
44
1.32
3523--3588
15
4.8
14
72
14
57
46
0
0
53
1.00
3530--3586
11
5.5
11
74
16
59
47
0
0
52
1.00
3751--3781
16
1.9
16
93
0
53
32
9
0
58
1.31
4400--4447
18
2.5
20
86
6
64
37
8
6
47
1.59
4400--4453
20
2.8
19
86
5
65
37
7
5
50
1.54
5635--5690
26
2.2
26
86
0
76
33
14
7
44
1.72
7882--7931
26
1.9
26
83
0
64
28
16
10
46
1.78
15479--15516
11
3.5
11
85
10
51
57
2
0
39
1.12
17360--17390
16
1.9
16
100
0
62
54
6
0
38
1.26
17519--17780
107
2.5
105
90
2
393
41
10
8
39
1.70
19286--19331
21
2.2
21
92
0
74
4
34
30
30
1.77
19535--19594
27
2.2
27
96
0
111
23
31
21
23
1.98
22032--22061
2
15.0
2
100
0
60
50
0
0
50
1.00
22178--22237
16
3.8
16
90
0
102
8
20
40
31
1.82
22178--22237
9
7.3
9
75
21
69
8
20
40
31
1.82
22829--22857
15
1.9
15
100
0
58
34
6
6
51
1.55

Tables:   1

The End!