Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007478.1 Corchorus capsularis cultivar CVL-1 contig07499, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77857

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4983--5041
30
2.0
30
100
0
118
10
20
23
45
1.81
14387--14778
166
2.4
165
86
2
561
40
16
13
30
1.87
14891--14929
3
13.0
3
100
0
78
66
0
0
33
0.92
15518--15607
45
2.0
45
93
0
153
23
24
21
31
1.98
20233--20302
28
2.6
27
84
6
88
21
18
5
54
1.64
20364--20410
20
2.3
21
88
3
69
25
21
4
48
1.68
20427--20525
7
14.7
7
73
14
75
15
21
2
61
1.43
20434--20505
19
4.1
18
69
20
62
15
20
1
62
1.40
20427--20531
52
2.0
55
94
5
189
15
20
1
61
1.42
20469--20542
35
2.1
35
84
2
94
13
18
4
63
1.45
20579--20941
21
17.1
21
74
11
219
18
21
6
53
1.67
20591--20869
43
6.5
43
73
12
202
17
20
7
53
1.68
20802--20892
22
4.0
23
84
7
91
18
23
4
53
1.62
20969--21041
27
2.7
28
83
8
89
17
21
6
53
1.67
21423--21447
7
3.6
7
100
0
50
32
24
0
44
1.54
24217--24249
15
2.2
15
94
0
57
48
9
18
24
1.76
25531--25991
228
2.0
228
96
0
859
19
29
19
30
1.97
27108--27137
15
2.0
15
100
0
60
46
6
13
33
1.69
29160--29230
16
4.4
16
78
7
81
8
19
36
35
1.82
29471--29552
42
2.0
42
95
0
146
36
4
19
39
1.73
30086--30185
16
6.2
16
73
13
89
10
21
37
32
1.86
30094--30203
48
2.3
49
81
7
129
8
20
39
31
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35236--35293
3
19.3
3
100
0
116
32
0
0
67
0.91
39423--39469
24
2.0
24
91
0
76
25
25
23
25
2.00
45067--45145
35
2.3
35
90
0
122
21
26
13
37
1.91
45221--45512
145
2.0
145
97
0
557
26
14
15
42
1.86
45457--45633
90
2.0
90
97
0
336
40
7
9
41
1.67
46602--46922
166
2.0
165
89
3
495
54
5
14
24
1.62
47185--47246
31
2.0
31
90
0
97
45
8
19
27
1.78
53938--54015
32
2.5
31
81
6
86
41
16
16
25
1.89
54475--54506
2
16.0
2
100
0
64
50
0
0
50
1.00
64959--64995
12
3.1
12
92
0
56
45
8
27
18
1.77
72331--72361
2
16.0
2
93
6
55
48
0
0
51
1.00

Tables:   1

The End!