Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007480.1 Corchorus capsularis cultivar CVL-1 contig07501, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7486
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:2348 original size:12 final size:12

Alignment explanation


    Indices: 2330--2361  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

       2320 GCCGCGTAAC

                        
       2330 ACCGGCCACATG
          1 ACCGGCCACATG

            *           
       2342 TCCGGCCACATG
          1 ACCGGCCACATG

                    
       2354 ACCGGCCA
          1 ACCGGCCA

       2362 TCGCATGCGA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.22, C:0.44, G:0.25, T:0.09


Consensus pattern (12 bp):   
ACCGGCCACATG

Found at i:4183 original size:30 final size:30

Alignment explanation


    Indices: 4147--4209  Score: 101
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       4137 CATCTTTAGG

                                  *        
       4147 TCCATGATAAGTCCTT-GGCGCTTCATTCCC
          1 TCCATGATAAG-CCTTGGGCGCATCATTCCC

                                          
       4177 TCCATGATAAGCCTTGGGCGCATCATTCCC
          1 TCCATGATAAGCCTTGGGCGCATCATTCCC

               
       4207 TCC
          1 TCC

       4210 CCCTTGAAGA


Statistics
Matches: 31,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
  29    4  0.13
  30   27  0.87

ACGTcount: A:0.17, C:0.35, G:0.17, T:0.30


Consensus pattern (30 bp):   
TCCATGATAAGCCTTGGGCGCATCATTCCC
Done.