Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007482.1 Corchorus capsularis cultivar CVL-1 contig07503, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2974
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.36


Found at i:1103 original size:18 final size:19

Alignment explanation


    Indices: 1080--1117  Score: 60
    Period size: 18  Copynumber: 2.1  Consensus size: 19

       1070 GTGCATAGGC

                      *        
       1080 TGCATGGAG-GCATGGAGA
          1 TGCATGGAGACCATGGAGA

                               
       1098 TGCATGGAGACCATGGAGA
          1 TGCATGGAGACCATGGAGA

             
       1117 T
          1 T

       1118 AACGATGGAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18    9  0.50
  19    9  0.50

ACGTcount: A:0.29, C:0.13, G:0.39, T:0.18


Consensus pattern (19 bp):   
TGCATGGAGACCATGGAGA

Found at i:2671 original size:18 final size:19

Alignment explanation


    Indices: 2648--2685  Score: 60
    Period size: 18  Copynumber: 2.1  Consensus size: 19

       2638 GTGCATGGGC

                      *        
       2648 TGCATGGAG-GCATGGAGA
          1 TGCATGGAGACCATGGAGA

                               
       2666 TGCATGGAGACCATGGAGA
          1 TGCATGGAGACCATGGAGA

             
       2685 T
          1 T

       2686 AACAATGGAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18    9  0.50
  19    9  0.50

ACGTcount: A:0.29, C:0.13, G:0.39, T:0.18


Consensus pattern (19 bp):   
TGCATGGAGACCATGGAGA

Done.