genome.fa.s7484.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007484.1 Corchorus capsularis cultivar CVL-1 contig07505, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70524

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1745--1800	21	2.6	21	85	2	76	17	17	42	21	1.89
33149--33223	30	2.5	30	84	0	96	44	2	21	32	1.66
33212--33245	17	1.9	18	88	5	52	64	0	20	14	1.28
33182--33275	48	2.0	48	85	6	129	52	3	22	22	1.61
33256--33419	40	4.3	39	76	16	166	43	8	23	25	1.81
33323--33382	31	2.0	31	90	3	95	41	5	25	28	1.76
33283--33871	71	8.4	71	90	1	821	41	8	23	26	1.84
33283--33871	140	4.2	141	89	1	817	41	8	23	26	1.84
33283--33881	211	2.8	211	86	1	842	41	9	23	26	1.84
34190--34225	19	1.9	18	88	5	54	41	2	22	33	1.68
42882--42917	19	1.9	18	88	5	54	41	2	22	33	1.68
44417--44506	39	2.3	39	90	1	135	48	8	12	30	1.71
44519--44747	41	5.6	41	82	5	293	46	10	21	21	1.81
44519--44747	82	2.8	82	90	2	345	46	10	21	21	1.81
44519--44756	123	1.9	122	90	2	379	46	10	21	22	1.81
44754--44928	36	4.9	35	76	10	169	41	7	22	28	1.81
44754--44946	72	2.8	70	85	6	259	43	7	21	27	1.79
46916--46990	21	3.5	21	88	1	114	13	16	48	22	1.80
53433--53486	21	2.5	21	93	3	90	14	20	46	18	1.84
60503--60577	34	2.1	37	82	7	93	58	2	9	29	1.43
60949--61008	27	2.2	27	82	11	70	60	11	5	23	1.51
62997--63093	27	3.6	27	80	1	86	18	14	22	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63026--63093	28	2.5	26	83	7	73	22	16	20	41	1.90
67100--67152	26	2.1	27	86	10	76	54	1	37	5	1.35
68918--68964	19	2.4	19	86	10	60	38	2	21	38	1.65

Tables:   1

The End!