Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007488.1 Corchorus capsularis cultivar CVL-1 contig07509, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17247
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:15773 original size:18 final size:18

Alignment explanation


    Indices: 15747--15782  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

      15737 TGGAGAATAC

                *             
      15747 TCAAGCCAAGAAAATTGA
          1 TCAAACCAAGAAAATTGA

                        *     
      15765 TCAAACCAAGAATATTGA
          1 TCAAACCAAGAAAATTGA

      15783 AAATGCCTAG


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.50, C:0.17, G:0.14, T:0.19


Consensus pattern (18 bp):   
TCAAACCAAGAAAATTGA

Found at i:17190 original size:2 final size:2

Alignment explanation


    Indices: 17185--17247  Score: 126
    Period size: 2  Copynumber: 31.5  Consensus size: 2

      17175 TATTTGATCC

                                                                          
      17185 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

                                           
      17227 GA GA GA GA GA GA GA GA GA GA G
          1 GA GA GA GA GA GA GA GA GA GA G


Statistics
Matches: 61,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   61  1.00

ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00


Consensus pattern (2 bp):   
GA

Done.