Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007489.1 Corchorus capsularis cultivar CVL-1 contig07510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55926

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4983--5048
33
2.0
32
91
2
105
6
45
25
22
1.75
6890--6931
21
2.0
21
85
0
57
11
7
11
69
1.37
14398--14425
12
2.3
12
100
0
56
17
42
28
10
1.83
15954--15980
14
1.9
14
100
0
54
7
3
7
81
0.97
19289--19337
21
2.3
20
80
10
53
14
26
16
42
1.86
20460--20513
22
2.5
22
84
6
65
75
5
11
7
1.16
20465--20520
28
2.0
28
82
6
69
73
5
14
7
1.23
23615--23719
33
3.2
32
82
5
120
45
21
8
23
1.79
31826--31887
22
2.9
22
85
2
90
30
8
9
51
1.63
33155--33180
10
2.6
10
100
0
52
23
7
19
50
1.73
35537--35600
6
10.7
6
75
18
62
78
3
18
0
0.89
37667--37698
10
3.2
10
95
0
55
75
0
0
25
0.81
45539--45694
36
4.3
37
85
2
183
28
23
9
38
1.86
45669--45743
35
2.2
34
90
6
118
29
24
10
36
1.89
45719--46643
37
24.1
37
79
12
407
23
21
10
44
1.82
45736--45984
110
2.3
111
86
1
338
24
24
8
42
1.81
45719--45986
147
1.8
147
84
1
367
24
24
8
42
1.83
46047--46105
20
3.2
20
68
22
65
25
8
13
52
1.68
46114--46643
41
13.1
40
90
3
780
23
21
10
45
1.82
46647--47052
37
10.9
37
86
5
507
25
20
8
45
1.79
47017--47268
43
5.8
43
83
8
280
25
18
10
46
1.81
50420--50526
33
3.2
33
84
2
135
23
38
28
9
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51493--51526
8
4.1
8
85
7
50
58
14
2
23
1.50
51605--51631
5
5.4
5
100
0
54
77
0
0
22
0.76

Tables:   1

The End!